PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G012700.1
Common NameB456_001G012700, LOC105792992
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 346aa    MW: 40061 Da    PI: 5.3469
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G012700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.5e-36841752102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++e++ed++++ ++sws+  nsfvv+d ++f++++LpkyFkh+nf+SFvRQLn+YgF+k+++++         weF+++ F+ g+k+
  Gorai.001G012700.1  84 FLRKTFEMVEDPKTDPIVSWSSGRNSFVVWDCHRFSENLLPKYFKHKNFSSFVRQLNTYGFRKIDSDR---------WEFANEGFQGGRKH 165
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+++
  Gorai.001G012700.1 166 LLKNIKRRSR 175
                         *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-3880173IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.94E-3480173IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5780173IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3184173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1884107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-18122134IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340123147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-18135147IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVAWEHDNGG GELSYTTGFL NEPTGNGDQT ESSVVKEEPD EEMRLFDDMI NGVGDWNNSW  60
PSASLPDVLP KPMEGLNDLG PPPFLRKTFE MVEDPKTDPI VSWSSGRNSF VVWDCHRFSE  120
NLLPKYFKHK NFSSFVRQLN TYGFRKIDSD RWEFANEGFQ GGRKHLLKNI KRRSRYNKQQ  180
QGGGGVICID NSTNSRVGLE ADVEVLKQDH TSLQMEVSKL RQQQDDSNHR LSIVEERIHF  240
AECKQRRMCG FLAKMIKYPN FIQQLLHKRK ELDHEKKFNK RRRLLETQAT TNPIEEPMDP  300
IQDEEFLVSM DDRVVPEMST NEEVDVNDSK IYVELEQLVN WKPCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-238217318120Heat shock factor protein 1
5d5v_D7e-238217327129Heat shock factor protein 1
5d5v_B7e-238217327129Heat shock factor protein 1
5d5u_B7e-238217327129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166172LKNIKRR
2267282KRKELDHEKKFNKRRR
3279283KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6839090.0KJ683909.1 Gossypium hirsutum heat shock transcription factor (HSF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477385.10.0PREDICTED: heat stress transcription factor A-2-like
SwissprotO809828e-84HSFA2_ARATH; Heat stress transcription factor A-2
TrEMBLA0A0D2LRW50.0A0A0D2LRW5_G
STRINGPOPTR_0006s15050.11e-89(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-85heat shock transcription factor A2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]